Mercator4 - PlabiPD

Select one or more Mercator4 'User jobs' and/or 'Reference species annotations' below to view the bin count results on the tree viewer.

User jobs

Reference species annotations

Select from reference/user job proteomes to display the differences visually on the heatmap

Select baseline proteome (proteome A):

Select comparison proteome (proteome B):

Protein family is encoded by the mitochondrial genome in most or all plant clades

Protein family is encoded by the plastidial genome in most or all plant clades

Protein family is present only in proteome B

Protein family in proteome B contains 2+ paralogs more than in proteome A

Protein family in proteome B contains 1 paralog more than in proteome A

Protein family in both proteomes contains the same number of 1+ paralogs

Protein family in proteome B contains 1 paralog less than in proteome A

Protein family in proteome B contains 2+ paralogs less than in proteome A

Protein family is present only in proteome A

Protein family is not present in either proteome

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Mercator4 #

Mercator is an automated high performance plant functional annotation and classification tool. It can be used to annotate plant fasta files and for downstream analysis in the MapMan application.

Mapping files generated by Mercator4 can be used in the MapMan application, but the Pathway diagrams must start with X4 and correspond to the version of Mercator.

Users may still use old pathways (name does not start with X4), but these can only be used with mapping files generated from the older version of Mercator.

If you have any further questions, you may contact b.usadel[at]fz-juelich.de

See navigation tab about Mercator for details about Mercator4 online plant protein annotation tool

If you find Mercator4 useful please cite:-

Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B

MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis.

Mol Plant. 2019 Jun 3;12(6): 879-892

If you use the older version of Mercator, please cite:-

Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B.

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Plant, Cell and Environment. Vol. 37, no. 5. 2014.

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