Select one or more Mercator4 'User jobs' and/or 'Reference species annotations' below to view the bin count results on the tree viewer.

User jobs
Reference species annotations

Select from reference/user job proteomes to display the differences visually on the heatmap




Protein family is encoded by the mitochondrial genome in most or all plant clades
Protein family is encoded by the plastidial genome in most or all plant clades
Protein family is present only in proteome B
Protein family in proteome B contains 2+ paralogs more than in proteome A
Protein family in proteome B contains 1 paralog more than in proteome A
Protein family in both proteomes contains the same number of 1+ paralogs
Protein family in proteome B contains 1 paralog less than in proteome A
Protein family in proteome B contains 2+ paralogs less than in proteome A
Protein family is present only in proteome A
Protein family is not present in either proteome

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Mercator4 #

Mercator is an automated high performance tool for plant functional annotation and classification. You can use it to annotate plant Fasta files and for a downstream analysis in MapMan.

  • See navigation tab about Mercator¬†for details about the Mercator4 online plant protein annotation tool
  • If you find Mercator4 useful please cite:

If you need help please contact b.usadel[at]fz-juelich.de.

If you use these annotation files with MapMan you need to use Pathways that start with X4. If you want to use old pathways whose name doesn't start with X4 you can still use the old Mercator

https://plabipd.de/portal/mercator-sequence-annotation

Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B

MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis.

Mol Plant. 2019 Jun 3;12(6): 879-892

The old Mercator (Lohse et al. ,2014 different engine and ontology) is also still available.

Please evaluate this service! Let us know what you need and how we can improve; and give your feedback

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