Mercator4 - PlabiPD

Select one or more Mercator4 'User jobs' and/or 'Reference species annotations' below to view the bin count results on the tree viewer.

User jobs

Reference species annotations

Select from reference/user job proteomes to display the differences visually on the heatmap

Select baseline proteome (proteome A):

Select comparison proteome (proteome B):

Protein family is encoded by the mitochondrial genome in most or all plant clades

Protein family is encoded by the plastidial genome in most or all plant clades

Protein family is present only in proteome B

Protein family in proteome B contains 2+ paralogs more than in proteome A

Protein family in proteome B contains 1 paralog more than in proteome A

Protein family in both proteomes contains the same number of 1+ paralogs

Protein family in proteome B contains 1 paralog less than in proteome A

Protein family in proteome B contains 2+ paralogs less than in proteome A

Protein family is present only in proteome A

Protein family is not present in either proteome

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Mercator4 #

Mercator is an automated high performance tool for plant functional annotation and classification. You can use it to annotate plant Fasta files and for a downstream analysis in MapMan.

See navigation tab about Mercator for details about the Mercator4 online plant protein annotation tool
If you find Mercator4 useful please cite:

Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B

MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis.

Mol Plant. 2019 Jun 3;12(6): 879-892

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