Select one or more Mercator4 'User jobs' and/or 'Reference species annotations' below to view the bin count results on the tree viewer.

User jobs
Reference species annotations


Mercator4 #

Mercator is an automated high performance tool for plant functional annotation and classification. You can use it to annotate plant Fasta files and for a downstream analysis in MapMan.

If you use these annotation files with MapMan you need to use Pathways that start with X4. If you want to use old pathways whose name doesn't start with X4 you can still use the old Mercator, in any case you can contact b.usadel[at]

  • See navigation tab about Mercator¬†for details about the Mercator4 online plant protein annotation tool
  • If you find Mercator4 useful please cite:

Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B

MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis.

Mol Plant. 2019 Jun 3;12(6): 879-892

The old Mercator (Lohse et al. ,2014 different engine and ontology) is also still available.

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